Publications in compliance with the MIRAGE MS guidelines
R. Raghunathan, N.K. Polinski, J.A. Klein, J.D. Hogan, C. Shao, K. Khatri, D.R. Leon, M.E. McComb, F.P. Manfredsson, C.E. Sortwell, and J. Zaia (2018) Glycomic and Proteomic changes in aging brain nigrostriatal pathway; Mol Cell Proteomics; doi:10.1074/mcp.RA118.000680. [Epub ahead of print].
J.D. Hogan, J.A. Klein, J. Wu, P. Chopra, G.J. Boons, L. Carvalho, C. Lin, and J. Zaia (2018) Software for peak finding and elemental composition assignment for glycosaminoglycan tandem mass spectra; Mol Cell Proteomics; 17; 1448-1456.
J. Wu, J. Wei, J.D. Hogan, P. Chopra, A. Joshi, W. Lu, J. Klein, G.J. Boons, C. Lin, and J. Zaia (2018) Negative Electron Transfer Dissociation Sequencing of 3-O-Sulfation-Containing Heparan Sulfate Oligosaccharides; J Am Soc Mass Spectrom; 29; 1262-1272.
J. Zaia, K. Khatri, J.A. Klein, C. Shao, Y. Sheng, and R. Viner (2016) Complete Molecular Weight Profiling of Low Molecular Weight Heparins Using Size Exclusion Chromatography-Ion Suppressor-High Resolution Mass Spectrometry; Anal Chem; 88; 10654-10660.
Y. Huang, X. Yu, Y. Mao, C.E. Costello, J. Zaia, and C. Lin (2013) De Novo Sequencing of Heparan Sulfate Oligosaccharides by Electron-Activated Dissociation; Anal Chem; 85; 11979-11986.
C. Jin, D.T. Kenny, E.C. Skoog, M. Padra, B. Adamczyk, V. Vitizeva, A. Thorell, V. Venkatakrishnan, S.K. Lindén, N.G. Karlsson (2017) Structural Diversity of Human Gastric Mucin Glycans. Mol Cell Proteomics. 16(5):743-758. doi:10.1074/mcp.M116.067983. PMID:28461410.
Alocci D., Mariethoz J., Gastaldello A., Gasteiger E., Karlsson N.G., Kolarich D., Packer N.H., Lisacek F. (2018) GlyConnect: glycoproteomics goes visual, interactive and analytical. J. Proteome Res.
doi:10.1021/acs.jproteome.8b00766. PMID:30574787
Möginger U., Grunewald S., Hennig R., Kuo C.W., Schirmeister F., Voth H., Rapp E., Khoo K.H., Seeberger P.H., Simon J.C., Kolarich D. (2018) Alterations of the Human Skin N- and O-Glycome in Basal Cell Carcinoma and Squamous Cell Carcinoma. Front Oncol. 8:70.
doi:10.3389/fonc.2018.00070. PMID:29619343
Rath C.B., Schirmeister F., Figl R., Seeberger P.H., Schäffer C., Kolarich D. (2018) Flagellin Glycoproteomics of the Periodontitis Associated Pathogen Selenomonas sputigena Reveals Previously Not Described O-glycans and Rhamnose Fragment Rearrangement Occurring on the Glycopeptides. Mol Cell Proteomics. 17(4):721-736.
doi:10.1074/mcp.RA117.000394. PMID:29339411
O'Neill E.C., Kuhaudomlarp S., Rejzek M., Fangel J.U., Alagesan K., Kolarich D., Willats W.G.T., Field R.A. (2017) Exploring the Glycans of Euglena gracilis. Biology (Basel). 6(4). pii: E45.
doi:10.3390/biology6040045. PMID:29244725
Hinneburg H., Korac P., Schirmeister F., Gasparov S., Seeberger P.H., Zoldoš V., Kolarich D. (2017) Unlocking Cancer Glycomes from Histopathological Formalin-fixed and Paraffin-embedded (FFPE) Tissue Microdissections.
Mol Cell Proteomics. 16(4):524-536.
doi:10.1074/mcp.M116.062414. PMID:28122943
Alagesan K., Khilji S.K., Kolarich D. (2017) It is all about the solvent: on the importance of the mobile phase for ZIC-HILIC glycopeptide enrichment. Anal Bioanal Chem. 409(2):529-538.
doi:10.1007/s00216-016-0051-6. PMID:27909778