COMPUTER-AIDED DECISION MAKING IN
PHARMACEUTICAL RESEARCH
Gerald M. Maggiora
Computer-Aided Drug Discovery, Pharmacia Corporation, 301 Henrietta Street,
Kalamazoo, MI 49007-4940, USA
Received: 7th
June 2002 / Published: 15th
May 2003
Abstract
A description of a computer-aided decision making methodology, called the
Analytic Hierarchy Process (AHP), is presented. The method was developed by
Thomas Saaty over three decades ago to handle a variety of business-oriented
decision making activities. The AHP is a flexible methodology that allows
both subjective and objective data to be considered in a decision process.
Moreover, it is intuitive and relatively easy to understand the way in which
decisions are made. Although many business-related applications have been
carried out over the years, very few science-based applications currently
exist. In addition to a description of the basic methodology an example from
drug-discovery research, namely biological target selection, will be presented
as an illustration of how the AHP methodology can be applied in pharmaceutical
research. A brief mention of other possible applications will also be provided.
Introduction
Decision making methodologies have been applied in a broad range of situations
for many years. Most applications to date have been in business-related activities.
This is necessitated by the number and complexity of the issues that bear
upon many business decisions. Significant advances in computer software and
hardware have also played a major role by providing the "computer power" necessary
to treat decision problems more realistically. In pharmaceutical research,
especially in large pharmaceutical companies where many projects are going
on simultaneously, many of the same types of decision problems exist. However,
in contrast to other business areas, decision theoretic approaches are essentially
non-existent. One of the reasons for this may be the perceived difficulty
of properly formulating research-based decision problems, which involve both
quantitative
and qualitative
variables. Moreover, the reasoning behind decision-theoretic methodologies
and the results obtained from them are often non-intuitive and difficult to
understand.
In the seventies Thomas Saaty developed a decision-theoretic methodology,
called the Analytic
Hierarchy Process, that is relatively simple conceptually and thus,
may be more suitable to research-based decision problems. Details of his methodology
were described in his first book (1). The AHP represents a fundamental approach
that is based upon pairwise comparisons, is designed to cope with both the
rational
and intuitive
aspects of a decision problem, and is capable of selecting the best alternatives
with respect to a number of competing criteria. Import-antly, the AHP allows
for inconsistencies in judge-ments and affords a means for improving consistency.
Table 1 provides a brief listing of the some the types of decision problems
that the AHP has been applied to. A number of books by Saaty and others (2,3,4,5)
describe numerous types of applications with examples. More recently Saaty
has generalised his theory to deal with dependence and feedback (6). Interestingly,
very few applications in chemical and biological research have appeared.
|
Table 1. A sample of the breadth of
AHP applications.
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|
Architectural Design
|
Technological Choices
|
|
Conflict Resolution
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Marketing Strategies
|
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Performance Evaluations
|
Pricing Strategies
|
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Student Admissions
|
Environmental Decisions
|
|
I/O Analysis
|
Cost-Benefit Analysis
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Economic Forecasting
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Transportation Systems
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Oil Prospecting
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Musical Compositions
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Selection of Bridge Type
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Movie Criticism
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The AHP, as its name implies, deals with decision problems that can be structured
hierarchically. Figure 1 depicts a simple three-level hierarchy. As is seen
from the figure, the `Goal' is evaluated with respect to the three `Criteria'
that each subsume the entire set of `Alternatives.' The relative importance
or ranking of each criterion to the decision goal is determined from pairwise
comparisons among the criteria. Pairwise comparisons are based upon relative
measurements that characterise the `dominance' of one criterion with
respect to another. As it is used here, `dominance' is taken as a generic
term that characterises the dominance, importance, desirability, likelihood,
or whatever term is appropriate,
of one criterion over another.
Many of the criteria dealt with in type of decision problems illustrated in
this work are intangible
and hence, their relative measurements are largely subjective.
Figure
1. Example of a simple hierarchy consisting of a goal, three
subordinate criteria relevant to the goal, and the N
alternatives with respect to each of the criteria.
For example, in selecting a target for drug discovery in a large pharmaceutical
company (vide
infra), how important is `Unmet Medical Need' compared to the company's
`Intellectual Property' with respect to the target?
While this may seem a bit like comparing `apples' to `oranges', it is something
that humans do, subjectively, all of the time. Psychologists have studied
such comparative assessments for many years and have determined that humans
can only effectively handle about nine levels or gradations in making subjective,
comparative assessments (7), as summarised in Table 2.
|
Table 2. The Fundamental Scale (7).
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|
Intensity of Importance
|
Definition
|
Explanation
|
|
1
|
Equal Importance
|
Two activities contribute equally to the objective
|
|
2
|
Weak
|
|
|
3
|
Moderate Importance
|
Experience and judgement slightly favour one activity
over another
|
In addition, a reciprocal
relationship exists such that if, for example, bioactivity is deemed
to be twice as important a criterion as, say, solubility, then solubility
must be only half as important as bioactivity.
All of the pairwise comparisons among the criteria are elements of the pairwise
comparison matrix or simply the comparison
matrix (see
e.g. Eq. (1)). The values of the components of the principal
eigenvector of the comparison matrix are all positive and correspond,
with suitable normalisation, to the relative ranking of the criteria, which
sum to unity. Thus, the relative ranking is a linear order that is generated
from a set of pairwise comparisons.
The decision `Alternatives,' on the other hand, are ranked with respect to
each criterion using an absolute measurement scale appropriate to that criterion.
For example, `very high,' `high,' `medium,' `low,' and `very low' represent
a possible scale, which could be given values 4, 3, 2, 1, 0, respectively.
As has been noted by many cognitive psychologists this is well within the
range of nine levels that humans can effectively discriminate (1,2,3). The
final decision is achieved by weighting the result obtained for a given alternative
by the relative ranking of the corresponding criterion and then summing over
the three criteria. Each alternative is then placed in an ordered list with
respect to its overall "score". Importantly, computing the score for a new
alternative can be carried out independently of all other previously scored
alternatives, which is a significant benefit when large numbers of alternatives
are being considered as illustrated by the example described in this work.
In many applications, alternatives are treated in an analogous fashion to
criteria (vide
supra), that is the alternatives are directly compared to each other
and not to an absolute scale, but such comparisons are inappropriate in most
of the types of research applications of AHP considered here. This is because
in an absolute scale each alternative is evaluated separately. Adding a new
alternative does not influence the values associated with any of the alternatives
considered previously, and does not change their rankings relative to on another.
However, the new alternative can, depending upon its value, be inserted anywhere
in the previously ranked list of alternatives. This is quite advantageous
in many of the types of situations in pharmaceutical research where computer-aided
decision making may play a role.
The basic methodology will be presented in the Methodology
section, followed in the Results
and Discussion section by an example based on selecting a "biological
target" for drug discovery. The final section - Conclusions
and Future Work - provides a summary of the material and draws several
conclusions regarding the applicability of the AHP approach to decision making
in pharmaceutical research. All of the work presented here was carried out
with the software product ExpertChoice2000
(8).
Methodology
As has been noted above, pairwise comparison is a key element of AHP methodology.
A comparison
matrix, A,
is used to determine the relative dominance, order, importance, priority,
likelihood, etc. among a set of n
criteria {C1, C2, ..., Cn}.
Each element of A,
ai,j,
is obtained by comparing criteria according to an appropriate scale: ai,j
corresponds to how much the i-th
criterion is `favoured' over the j-th
criterion. Because of the reciprocal property of these comparative judgements
ai,j=1/aj,i
so, for example if ai,j=3,
then aj,i=1/3.
The comparison matrix is a positive, reciprocal matrix and is as shown in
eigenvalue form in Eq. (1)
where lmax
is the principal eigenvalue, [w1, w2, ..., wn]T
the principal eigenvector, and `T' represents the transpose. Because A
is a positive,
reciprocal
matrix the components of its principal eigenvector are all positive
(1,2,4,6) and in this work are normalised in either of two ways:
or
The normalised weights correspond to the relative dominance, importance, priority,
likelihood, etc. of each criterion.
An important issue with respect to the comparison matrix is its reciprocal
consistency,
which involves the reciprocal relationship: if ai,j>1,
then aj,i<1.
In words, if i-th
criterion dominates the j-th
criterion, then the
j-th criterion cannot also dominate the i-th
criterion. This type of consistency is simple to enforce. A more complex form
of consistency is transitive
consistency, namely that ai,j·aj,k=ai,k.
Again in words, if the
i-th criterion dominates the j-th
criterion by a factor of, say three, and the j-th
criterion dominates the k-th
criterion by a factor of, say one-half, then for transitive consistency the
i-th
criterion must dominate the k-th
criterion by a factor of 3·1/2=3/2.
Transitive consistency is the most difficult to achieve in practice but can
be approached by a careful analysis of the comparative judgements made. As
will be seen below, the inconsistency index, I, provides a useful measure
of transitive consistency.
Taking the unnormalised components of the principal eigenvector form an `adjusted'
comparison matrix, A´,
using their ratios. Thus each element of A´
is in this case given by a´i,j=wi/wj.
A little algebra shows that the principal eigenvector of the `adjusted' comparison
matrix is identical to that of the original comparison matrix and that the
eigenvalue is equal to the number of criteria n,
as shown in Eq. (3).
It can be shown (2,6) that lmax
n,
so that as A ->
A´,
that is as A
becomes more transitive consistent, lmax-> n.
Thus, one measure of consistency is
which is somewhat reminiscent in form to sample variance.
Consider the set of alternatives {A1, A2, ..., An}
and the matrix R
of alternatives ranked with respect to each of the n
criteria C1, C2, ..., Cn:
Ranking the alternatives with respect to the overall goal is obtained by weighting
a given alternative by each criterion, i.e.,
w(Ck),
and summing the result, which gives a linear form for the i-th
alternative
Alternatively, Eq. (6) can be written in matrix form:
In the more general case of a multi-level hierarchy with numerous, `nested'
criteria, a multi-linear form results rather than the linear form given in
Eq. (6) (2,6). The Appendix
should be consulted for more details.
Results and Discussion
Pharmaceutical research spans a wide range of activities from the initial
selection of an appropriate drug target, to the identification and optimisation
of a set of lead compounds, to studies of drug absorption, distribution, metabolism,
excretion, and toxicity, usually called ADMET, to the various clinical phases.
In principle, the AHP can be applied throughout this process, although such
applications are extremely rare and are non-existent in drug discovery. The
following provides a concrete example of how the AHP can be applied in drug
discovery to target selection. As is seen in Figure 2, numerous decision subcriteria
are grouped under the two main classes of decision criteria, namely `Business
Issues' and Scientific Issues.
Figure
2. Hierarchy for ranking the suitability of biological targets
(e.g.,
enzymes, receptors,...). Note that "Targets" refers to the total set of targets
considered, nine in the case examined in this work.
Business Issues are concerned with four major factors, Market Potential, Unmet
Medical Need, Intellectual Property Position, and External Competition. As
is clear from Figure 2 Scientific Issues, namely Freedom to Operate, Target
Validation, and Current Therapeutic Research Programs, have a more complex
hierarchy in that Target Validation is further ramified into four subordinate
decision criteria, namely Biochemical & Physiological Data, Structural
Data, Pharmacological Data, and Medical Data. Importantly, the relative contribution
of each of the criteria used to rank the possible targets (i.e.,
alternatives) with respect to all of the business and scientific criteria,
can easily be modified to assess their effect on the relative rankings at
the various levels of the hierarchy. This is a type a sensitivity analysis
that plays a crucial role in the decision process as will be seen in the sequel.
It is also important to stress that this is only one possible view of the
relevant business and scientific issues. In fact, the AHP is quite flexible
and is well suited to assessing a large number `what if` scenarios over many
different sets of criteria and subcriteria.
First, consider comparative evaluation of the four criteria under Business
Issues. Table 3 shows the relative importance attributed to each of the pairs
of criteria making up the comparison matrix. The inconsistency index for this
matrix is I=0.00,
that is the comparative ratings of the criteria associated with Business Issues
are internally consistent.
|
Table 3. Comparing Business Criteria.
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|
|
Market
Potential
|
Unmet
Medical Need
|
IP Position
|
External
Competition
|
Priority
Ranking
|
|
Market
Potential
|
1
|
3/2
|
1
|
2/1
|
0.269
|
|
Unmet
Medical Need
|
2/3
|
1
|
1/2
|
1/2
|
0.155
|
|
IP Position
|
1
|
2/1
|
1
|
1
|
0.288
|
|
External
Competition
|
1/2
|
2/1
|
1
|
1
|
0.288
|
The priority rankings given in the last column of the table are the normalised
components of the principal eigenvector, which indicate that IP Position and
External Competition are most important followed closely by Market Potential,
all three being significantly more important than Unmet Medical Need. As will
be seen in the sequel, the comparative values can be easily adjusted and the
impact of the adjustments on the overall rankings can be easily assessed.
It is important to recognise that the methodology has tremendous flexibility
and that both the criteria and their comparative values are subject to modification.
Analogously to Business Issues, the following comparative values make up the
comparison matrix for Scientific Issues as shown in Table 4. Unlike for Business
Issues, the comparative ratings for the three criteria under Science Issues
have an inconsistency index of I=0.10,
which is near the upper bound of "acceptable" values for this index.
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Table 4. Comparing Science Criteria.
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|
|
Freedom
to Operate
|
Target
Validation
|
Current
Therapeutic Research
|
Priority
Ranking
|
|
Freedom to Operate
|
1
|
3/2
|
1/2
|
0.221
|
|
Target Validation
|
2/3
|
1
|
2/1
|
0.460
|
|
Current Therapeutic Research
|
2/1
|
1/2
|
1
|
0.319
|
From the table it is clear that Target Validation is the most important criterion
followed by Current Therapeutic Research and Freedom to Operate. Target Validation
is obviously important as unvalidated targets would be less desirable than
validated ones. However, consideration of the nature of the validation is
also important. Thus, Target Validation is further ramified in an effort to
address the relative importance of the different categories of validation,
which will be discussed further below (see also Table 5). Current Therapeutic
Research assesses how on-going research projects may impact the choice of
new targets. This manifests itself in basically two ways, competition from
on-going projects and an improved experience and knowledge base due to research
that has been carried out in the area. In contrast to the case of Target Validation
these two competing factors will not be explicitly considered, although to
do so is quite simple, requiring only an addition level to the hierarchy subsumed
under the Current Therapeutic Research category. Freedom to Operate is related
to IP Position. IP Position focuses primarily on the patent status of bioactive
compounds related to the target and whether there is sufficient room in chemistry
space to discover and develop new compounds for the target. Freedom to Operate,
on the other hand, focuses more on the patent status of the target itself
as well as the related technologies needed to effectively carry out drug discovery
research on the target.
A comparison of the criteria relevant to Target Validation are presented in
Table 5.
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Table 5. Comparing Target Validation
Criteria.
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|
|
Biochem. & Physiol. Data
|
Structural Data
|
Pharmacol. Data
|
Medical Data
|
Priority Ranking
|
|
Biochem. & Physiol. Data
|
1
|
3/1
|
2/1
|
3/1
|
0.463
|
|
Structural Data
|
1/3
|
1
|
1
|
1
|
0.172
|
|
Pharmacol. Data
|
1/2
|
1
|
1
|
3/2
|
0.210
|
|
Medical Data
|
1/3
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1
|
2/3
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1
|
0.154
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As was the case for Business Issues, the inconsistency index has a value of
I=0.01,
that is the comparative ratings are essentially fully consistent.
From the Priority Ranking column in the table it is clear that Biochemical
& Physiological Data is the single most important decision criterion with
respect to Target Validation, more than twice as important as any of the other
criteria. As noted several times above, the results given in this table represent
only one set of comparative judgements. In addition, other criteria may be
added or some of the present criteria could be modified or eliminated. These
are issues that must be dealt with by the decision makers who possess appropriate
domain knowledge.
Global priorities for all of the criteria are given in Table 6.
The mathematical expressions for computation of the global priorities
are given in the Appendix. Note that these are in general multilinear rather
than linear forms. Interestingly, Current Therapeutic Research is significantly
more important than any of the other criteria. This is due to the complex
chain of weightings from the different levels of the hierarchy, as shown in
the Appendix.
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Table 6. Global Priorities.
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Criterion
|
Priority Rating
|
|
Current Therapeutic Research
|
0.213
|
|
Freedom to Operate
|
0.147
|
|
Biochem. & Physiol. Data
|
0.142
|
|
IP Position
|
0.096
|
|
External Competition
|
0.096
|
|
Market Potential
|
0.090
|
|
Pharmacological Data
|
0.064
|
|
Structural Data
|
0.053
|
|
Unmet Medical Need
|
0.052
|
|
Medical Data
|
0.047
|
To determine the overall target rankings it is necessary first to develop
a rating
scale for each of the targets with respect to each of the global priorities.
Table 7 illustrates such rating scales for three of the criteria: Unmet Medical
Need, External Competition, and Biochemical and Physiological Data. Typically,
a rating scale assigns a numerical priority ranking to each object being ranked
(targets in the present case) with respect to each of the relevant criteria.
A qualitative description is associated with each priority ranking score.
For example, under Unmet Medical Need the priority ranking of 1.00 is associated
with the descriptive phrase "Very Large," while the score of 0.25 is associated
with "Small". The use of such descriptive language to characterise how a given
target is ranked with respect to a specific criterion facilitates the type
of qualitative reasoning that is essential in many decision making processes
and is particularly useful here. Note that the largest priority value is one
and that the priority values do not sum to unity. This is called the "Ideal"
normalisation and is used in all of the rating scales in this study.
It is important to note that both the description and priority score should
be relevant to the criterion being considered.
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Table 7. Examples of Rating Scales.
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|
Unmet Medical Need
|
|
External Competition
|
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Biochem. & Physiol. Data
|
|
Description
|
Priority
|
|
Description
|
Priority
|
|
Description
|
Priority
|
|
Very Large
|
1.00
|
|
None
|
1.00
|
|
Significant
|
1.00
|
|
Large
|
0.75
|
|
Weak
|
0.75
|
|
Reasonable
|
0.75
|
|
Moderate
|
0.50
|
|
Moderate
|
0.50
|
|
Small
|
0.50
|
|
Small
|
0.25
|
|
Strong
|
0.25
|
|
Very Little
|
0.25
|
|
Very Small
|
0.01
|
|
Very Strong
|
0.01
|
|
|
|
Take for example the case of External Competition where the ordering of descriptions
seems to be reversed from the typical ordering seen in Unmet Medical Need
or in Biochemical and Physiological Data. In External Competition the description
"None" corresponds to a priority value of 1.00, which is quite sensible here
since the most desirable case would be one in which external competition is
non-existent.
To determine the overall rankings for a specific target, each of the ten global
priorities given in Table 6 is multiplied by its corresponding priority score
for that target and the products are summed. The results for all nine targets
are summarised in Table 8 (see next page), which shows the rank ordering of
the targets and the ratings for each criterion. Target #2 is seen to be the
highest ranked target and Target #9 the lowest ranked target - note that the
ranking is again based upon the Ideal scale. The relative
ratings (on the unit scale) of the five best targets is given in Table
9. These results have an overall inconsistency index of I
= 0.02, which is quite good. From the table it is clear that the resulting
rankings are reasonably close numerically, which begs the question of exactly
how sensitive the final results are to the various choices of the scales and
comparative judgements used in the decision model.
ExpertChoice2000
provides a useful facility for exploring the sensitivity of the decision model
to the choice of scales, comparative judgements among criteria, and the presence
or absence of specific criteria. Several examples that illustrate the effect
of modifying the relative weighting of various criteria on the overall goal
of the decision process are provided in Figures 3-5.
Both plots in Figure 3 are concerned with the effect of modifying the four
Target Validation variables-Biochemical & Physiological Data, Structural
Data, Pharmacological Data, and Medical Data (see Table 5 for the weights
and additional details).
|
Table 8. Rank ordering of the targets
and the ratings for each criterion
|
|
Ideal Mode
|
|
Ratings
|
|
Alternatives
|
Total
|
|
Market Potential
|
Unmet
Medical
Need
|
IP
Position
|
External
Competit.
|
Freedom to Operate
|
Biochem. & Physiol. Data
|
Structural Data
|
Pharmacol. Data
|
Medical
Data
|
Current
Therapeut. Research Programs
|
|
Target #2
|
0.741
|
|
Moderate
|
Moderate
|
Strong
|
None
|
Weak
|
Reasonable
|
Very
Little
|
Reasonable
|
Small
|
Strong
|
|
Target #1
|
0.734
|
|
Large
|
Small
|
Moderate
|
Weak
|
Moderate
|
Significant
|
Small
|
Reasonable
|
Reasonable
|
Strong
|
|
Target #3
|
0.725
|
|
Very Large
|
Small
|
Strong
|
Strong
|
Moderate
|
Reasonable
|
Small
|
Significant
|
Significant
|
Strong
|
|
Target #4
|
0.685
|
|
Small
|
Large
|
Very Strong
|
Moderate
|
Weak
|
Significant
|
Reasonable
|
Small
|
Small
|
Modest
|
|
Target #5
|
0.665
|
|
Very
Small
|
Very Large
|
Strong
|
Very Strong
|
Strong
|
Significant
|
Significant
|
Reasonable
|
Reasonable
|
Strong
|
|
Target #8
|
0.582
|
|
Moderate
|
Moderate
|
Very Weak
|
Moderate
|
Weak
|
Reasonable
|
Small
|
Reasonable
|
Small
|
Modest
|
|
Target #7
|
0.465
|
|
Large
|
Small
|
Weak
|
Weak
|
Weak
|
Small
|
Small
|
Very
Little
|
Very
Little
|
Weak
|
|
Target #6
|
0.431
|
|
Moderate
|
Small
|
Moderate
|
Weak
|
Very Strong
|
Reasonable
|
Reasonable
|
Small
|
Very
Little
|
Weak
|
|
Target #9
|
0.385
|
|
Moderate
|
Moderate
|
Very Strong
|
Strong
|
Weak
|
Small
|
Very
Little
|
Very
Little
|
Very
Little
|
None
|
|
Table 9. Relative ratings of five best
targets.
|
|
Target Rankings
|
Relative Ratings
|
|
Target #2
|
0.211
|
|
Target #1
|
0.206
|
|
Target #3
|
0.203
|
|
Target #4
|
0.196
|
|
Target #5
|
0.184
|
In the upper panel the heights of the unfilled vertical bars correspond to
the respective weights used in the current study, namely, 0.463, 0.172, 0.210,
and 0.154, for the four variables (see the left-hand ordinate). The colored
lines correspond to the normalised ratings of Targets #1-#5 with respect to
each of the same four variables (see the right-hand ordinate). Ratings with
a large spread of values, such as those associated with Structural Data, tend
to be more sensitive than those with a small spread of values, such as Biochemical
& Physiological Data, to changes in the relative weightings. The OVERALL
values denote the target ratings with respect to Target Validation only.
Comparing the upper and lower panels of the figure clearly shows that by increasing
the weight for Structural Data, the most sensitive variable, from 0.17 to
0.48 not only increases the general spread of the ratings values but, more
importantly, causes a change in the order of target rankings. Changing the
weighting of a less sensitive variable such as Biochemical & Physiological
Data has a much smaller overall effect and does not change the ranking order.
Figure
3. Sensitivity plots from ExpertChoice2000
showing the effect of changing the weighting of Target Validation variables
- Biochemical & Physiological Data, Structural Data, Pharmacological Data,
and Medical Data - on the overall target rankings. Consult the text for further
details.
The upper panel in Figure 4 illustrates the sensitivity of the target rankings
to changing the weightings of the four criteria associated with Business Issues
- Market Potential, Unmet Medical Need, IP Position, and External Competition
(see Tables 3 and 4 for additional details).
As was the case in Figure 3, the coloured lines indicate the relative ratings
of the targets with respect to each of the business criteria (upper panel)
and science criteria (lower panel), and the unfilled bars indicate their relative
weights. Because it has the largest ratings spread, External Competition will
have the largest effect on the overall target ratings with respect to Business
Issues, while Freedom to Operate will have a similar, but relatively smaller
effect, on the over target ratings with respect to Science Issues.
Figure
4. Sensitivity plots from ExpertChoice2000
illustrating the sensitivity of the four business-related issues (upper panel)
and the three science-related issues (lower panel). Consult the text for further
details.
In the upper panel of the Figure 5 the unfilled vertical bars show the original
weightings for Business Issues and Science Issues, 0.33 and 0.66, respectively.
The coloured lines in the figure correspond to the values that the different
targets have with respect to Business Issues and Science Issues. These values
are appropriately modified by the weights for Business Issues and Science
Issues and then combined to yield the OVERALL scores, which in this case are
the final ratings and thus rankings of the different targets. The target rankings
shown in colour correspond to the values given in Table 9. The lower panel
of the figure shows the effect of modifying the weights so that Business and
Science Issues are now of equal importance. As is seen in the figure, target
rankings are unchanged although Target #1 is now ranked somewhat higher and
Target #5 somewhat lower.
Figure
5. Sensitivity plot from ExpertChoice2000
showing the effect of changing the weighting of Business Issues with respect
to Science Issues on the overall target rankings. Consult the text for further
details.
The relative rankings of the other targets remain largely unchanged. To change
the order of the rankings requires a significant distortion of the Business
Issues to Science Issues ratio. Thus, the rankings are largely stable to perturbations
of these weightings. This is not, however, the case with respect to other
criteria, as was seen above, but this is not surprising given the narrower
ratings spreads.
Conclusions and Future Work
As research environments become more and more complex the need for computer-aided
decision making methods will gain in importance. As seen in the present work,
the AHP is a flexible decision-making tool that is capable of dealing with
the types of subjective and objective data that are typically associated with
many scientific decisions. Importantly, sensitivity analysis provides an appropriate
means for assessing the robustness of a given decision model. It is also important
to note that the usefulness and applicability of each decision model depends
heavily on the domain knowledge of the decision makers. In fact, the results
afforded by any decision model built without appropriate domain knowledge
are at best likely to be misleading and at worst likely to be entirely meaningless.
Although the example given above deals only with biological target selection,
it contains many of the features found in other scientific decision processes,
examples of which include: (1) assessing "molecular quality," (2) evaluating
molecular docking software, (3) assessing biological promiscuity, and (4)
assessing drug candidate status. An interesting possible application of the
AHP methodology may be in assessing the performance of scientific research
personnel. While such an application has not to my knowledge been carried
out to date, many such assessments have been carried out in a number of business
areas.
References and Notes
[1] Saaty, T. L. (1980). The
Analytic Hierarchy Process. McGraw-Hill, New York.
[2] Saaty, T. L. (1994). Fundamentals
of Decision Making and Priority Theory. RWS Publications, Pittsburgh, PA.
[3] Saaty, T. L. & Vargas, L. G. (1994).Decision
Making in Economic, Political, Social, and Technological Environments.
RWS Publications, Pittsburgh, PA.
[4] Saaty, R. W. & Vargas, L. G. (Eds.)(1987). "The Analytic Hierarch Process-Theoretical
Developments and Some Applications." Mathematical
Modelling. 9:161-395.
[5] Lootsma, F. A. (1999). Multi-Criteria
Decision Making Via Ratio and Difference Judgement. Kluwer Academic
Publishers, Dordrecht, The Netherlands.
[6] Saaty, T. L. (1996). The
Analytic Network Process-Decision Making with Dependence and Feedback.
RWS Publications, Pittsburgh, PA.
[7] See Table 3.1 in reference (2).
[8] ExpertChoice2000,
Expert Choice, Inc., Pittsburgh, PA, (2000).
Appendix
As noted by Saaty (1-4, 6), the hierarchical, weighted summations carried
out in the AHP are not linear forms but are rather more complex mathematical
objects called multilinear
forms.
This is illustrated by considering the hierarchy in Figure 2, which is shown
again in Figure A1, where all of the explicitly designated decision criteria
have been symbolically represented for mathematical convenience. Multilinear
forms are constructed from the nested, weighted summations of linear forms
such as those given in Eq. (6). This illustrated in Eq. (A1) for Ak
(G),
the value for the k-th
alternative with respect to the overall goal in the hierarchy depicted in
Figure A1,
Expanding Eq. (A1) yields
The multilinearity comes from the product weight terms terms such as

. Considering all of the
Ak
(
G)
terms, where
k=1,2,...,
n,
yields
n
equations similar to Eq. (A2), which can be rearranged into the matrix equation
shown in Eq. (A3) below
This is identical in form to Eq. (7) except that the terms in the "weight
vector" are multilinear rather than linear.
Figure
A1. Target-assessment hierarchy identical to Figure 2 except
that the designations have been replaced by mathematical symbols.
Published in "Molecular Informatics: Confronting Complexity", Martin
G. Hicks & Carsten Kettner (Eds.), Proceedings of the Beilstein-Institut
Workshop, May 13th
- 16th
2002, Bozen, Italy